Elba Raimúndez

Results 15 comments of Elba Raimúndez

Storage of intermediate results

And -- as a remark -- this is not an isolated case :( EDIT: Maybe the group of persons involved in the storage development can have a look?

Flaky test `test/sample/test_sample.py::test_samples_cis`

> ..., and the test adjusted. @yannikschaelte For the second part, what would you have in mind? Just for the sake of testing the visualization function to, e.g. fix the...

Add warning if no priors given in sampling (just bounds)

Not yet, thanks for reminding.

importer.create_objective() should return the negative log posterior or just the neg. log likelihood ?

Another thing/issue related to this question: When setting, e.g., different AMICI solver options one needs to do that on the `importer.create_objective()` object since there is not `amici_solver` field in the...

Add Miao et al. (2010)

@EmadAlamoudi what is the status here?

Add Jafarnejad et al.

I thought the plan was also to ask the authors ? How is the status on this ?

Add Jafarnejad et al.

@MerktSimon what is the status on this model?

Fix bounds and scales for some parameters in Isensee_JCB2018

> The model doesn't appear to unscale the parameter, so estimating in `[-5, 3]` is incorrect, and instead should be `[0.00001, 1000]`. I see what you mean. However, the parameter...

Fix bounds and scales for some parameters in Isensee_JCB2018

> I believe this is an artifact from the d2d implementation where it seems like parameters can only be fixed on a linear scale (see for example reduced/regular version of...

Additional Model: D’Alessandro LA, Samaga R, Maiwald T et al. PLoS CB 2015

@MerktSimon what is the status here?