Eric Kernfeld

Multi cca improvements

2

Hi Seurat devs, I have made some changes to the `RunMultiCCA` function. If you'd like to incorporate these changes, I think they will bring `RunMultiCCA` better in line with Seurat's...

variable length strings in metadata prevent opening loomR output in loompy

1

The loompy specification says that strings must have fixed length. Using `loomR` version 0.2.0, I get hdf5 files that store strings as variable-length. Then, when I try to open them...

Cannot find shared object libhdf5_hl.so.100

10

This error message is very similar to #94, but I tried the [fix from vondoReshi](https://github.com/hhoeflin/hdf5r/issues/94#issuecomment-412070367) and it doesn't solve this. Note that the filename ends in `100`, not `10`. Prior...

When I try `cor`, I get errors like `Error in cor(DelayedArray(x), DelayedArray(y)) : 'x' must be numeric`. Am I missing something simple? If it's not implemented, I have a little...

For datasets with outliers, `kknn::specClust` runs into an igraph/ARPACK eigenvalue convergence error. https://github.com/igraph/igraph/issues/512 On that thread, `ntamas` recommends removing isolated vertices from your graph, so one solution might be to...

Mathematical description of indirect effects

3

Dear Dr. Wang, Dictys is a beautiful and thorough piece of work -- thank you for your continued efforts. I don't have a software issue to report, just a docs...

renv R package

3

Hi renv devs! Is this the same as the renv from https://github.com/rstudio/renv ?

Hi Luscombe Group! Really neat work on this paper. I am just dipping my toes in the water with tensorflow and neural nets, but I'd like to try out your...

Indexing into list of genes with a covariance matrix

1

Hi! I'm a causal inference and transcriptional data enthusiast, and I'm excited to try out scKINETICS because I think the backronym is really cool and it has a really neat...

Dear DNAnexus support, I am looking into running Tensorboard using a DNAnexus app. I am using the [tutorial from this repo](https://github.com/dnanexus/dnanexus-example-applets/tree/master/Tutorials/bash/tensorboard-web-app). When I run `dx build_asset tensorflow_asset`, I get a...