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I have the same problem! Could you solve it? Thanks!
> it did run for a while but stopped with this: > > Traceback (most recent call last): File "/home/ibseq/anaconda3/envs/cite/bin/CITE-seq-Count", line 10, in sys.exit(main()) File "/home/ibseq/anaconda3/envs/cite/lib/python3.7/site-packages/cite_seq_count/**main**.py", line 409, in main...
> Looks good - you may want to set `--run_AA --run_AC` if you are planning to launch AA and AC after. Thanky for your quick reply! And I try this...
> Sure! I will send these files to your email! Thank you for your help!
> For some cancer types (e.g. GBM) this rate is expected. I would be happy to look at any outputs or log files you would like to share to check...
> [email protected] I has changed another email, and successed!
> Strange - it is a Google-managed account and is able to get other messages. Perhaps can you try sending from a different email? It's also possible it does not...
> Thanks for sending the tumor-only files. I reviewed the files and the outputs look to be in order. I did not see any obvious bugs. In a small number...
> Yes, that should be an acceptable control. The files previously sent did not indicate a version of AmpliconSuite-pipeline, but please consider updating to latest (1.0.0): https://github.com/AmpliconSuite/AmpliconSuite-pipeline OK! I will...
Dear Jens, Sorry for several days to test new version of AA and PreAA! I used my normal samples and paired samples to test two version of AA(1.3.r1...