Erica Wood
Erica Wood
When I use this policy file: ``` CO2_LTG 400 5 0.03 100 cumulative-emissions CO2 2025 5.0 1 7999 ``` I get the following errors when I run the scenario: ```...
Hello! I am having issues loading food ontology (using `owltools`), as documented here: https://github.com/RTXteam/RTX-KG2/issues/300. I'm having trouble tracking down where in the Food Ontology this is occurring, so I wanted...
Motivated by #300 and https://github.com/FoodOntology/foodon/issues/277, we need to investigate the food ontology issue more. Currently, we are going to use a pickled version of `foodon.json` from `buildkg2.rtx.ai` and use that...
##### 1. Build and load KG2: - [x] Clear the instance using `bash -x clear-instance.sh` - [x] Clone the RTX repo from Github `git clone https://github.com/RTXteam/RTX-KG2.git` - [x] Setup the...
Per Sierra's Biolink presentation 9/9/23, there are statement qualifiers in the biolink model. As far as I know, we aren't using these.
Of the issues that pop up with KG2, a significant percentage of them seem to be `multi_ont_to_json_kg.py` related. While it it great that we can perform these imports with relatively...
From 9/6/23 AHM: we have almost everything in Hetionet, except for WikiPathways and SIDER. Since Hetionet is no longer being maintained, we should consider bringing these sources in.
I am starting this issue to be a running list of files that need to be better documented (particularly through comments). While some of the code is well commented, that...
From @saramsey: > Erica, do you know why the following triple in KG2.8.4pre doesn't have any qualified_object_direction property? ``` match (n {id: 'CHEMBL.COMPOUND:CHEMBL254219'})-[r]->(m {id: 'NCBIGene:477'}) return r; ``` > returns...
Spun off of #286, in addition to addressing `biolink:BiologicalEntity` nodes in KG2, we need to address `biolink:OrganismalEntity` node in KG2.