Evan Bolyen
Evan Bolyen
Hello, I am trying to streamline a galaxy flavor for QIIME 2 ([q2galaxy](https://github.com/qiime2/q2galaxy/tree/master/docker)), and would like to pre-install the tools with conda. After a bunch of experimentation, I've found the...
It looks a little strange when exporting a 2d image to see 3d objects. (It turns out the cube bug from #601 actually work pretty well for this purpose). It...
Just like in: https://github.com/biocore/qiime/pull/1657/files#diff-5c0794232d97a5a24529f1e340f1bea5R19
Hello, I am still somewhat new to Vega, so it's possible I am just entirely misunderstanding some bit of logic that would force an update, but in [this example plot](https://vega.github.io/editor/?#/url/vega/N4IgJAzgxgFgpgWwIYgFwhgF0wBwqgegIDc4BzJAOjIEtMYBXAI0poHsDp5kTykSArJQBWENgDsQAGhAATONABONHJnaT0AQQAETNgA9tOADZtM2uPqQITcbRBhsA7jXFltSMmUV9MdiJhIagE0UBDaAGZsikZwbgyuumyyAJ7ayBAQlNIgLrL0aAIADEUyOEiysq5khTJQEhE0NaigSPo0EABCSOKyaKBMPbIACmwQdOpoAIwyalAA1gCi+piKKKirDHCzofMA8hEREHCYaEUAvucy42TiSMYQaADaoHcIcGggJmYA6jT5MByxHuWzQADYLlJXtYPuh4E0sDkGDhZEFYSAABTfTB-AHaADU2imRQAlNoAFTaADMICu0PenzAKSBIPRAGUcHAoDQFDkmK4+i0QK4cAxTuhjsYuacZGxVOpHqgniAOVyeY8ZGzLDkAJIQYxDEAAXUuUJAb3RYH0LOMoPQnWSaQAskhMtoMWQSXyBf1heJReKQJLpTk5WoJIrlZ04Eh5toADJxMj0d0IBBemTR2PaAAicFUMFT6ZyADFjCpOTFE24Uxi0xmQA7UtoXW6PV6TecjTJUYFnvT0Zz4q4NSAGIpjJ9e-wh2QEuIsqIJDlVj0IFFFAh+yBMClOZ8osY+jJGnAj5GVZzubzNdqZHqDb1jXSd3v0YfjyBT+fno2Y3Hq2TQs62LTN-1zfNa3rUtyxwSsEyTKDQMbR0W1dcJ22NGRXV-fR5jgZkZH0YFbQ+E0zV3fd0EaYw-EUHJLBwej0F7BgEEofC0gAXi47QmW0AAyATtFY9i8II7QeL4wwhJEoI2MoEitm0ABCXjxAYYxjEE4TRMU1lVN4gBySgjJ0uTMAU4iDLU7QNK02kTW7IMoHuXklQHT4DRSNgxRXN9PkGJ8ZDWNx0XhMhER7NhkFcX1p0+Wd51Hb9BRAJSPlNTz0H0aA3P8qiQHLcQY3okKejIdE8gKELfKfDZFC2aLYo0UAEvQJKRxyVLPms0jaRkAAvOBFDYNAInuY4ZHEUJYU2OAu2w-R3JeEBoh5cRAz0bAYpyPKpV6-aPiGgVtVQKYX3WuJAylCIZRc-L0G83z7rmeYAGE6vFAQTt6M6Luc5BFHmSNQEo9FvF8nButGrchQmqATnioJ1i+JNkpyC1Pkh5E4E-HGcCYZl0Ay2krhAOJ6nkX1rpG30UigX0jq8pAfL8k8eSPT5SZkILBSKSgBHJiLESFG47knDrTBxf4CnJ6rATFpoJc+BWyfJ9rVqxiU2KBwig18xREex0bcc-VcFw3OHVvBz5PG8Xxjq-TnZAvPrQSInmQHdp2fZyP3nLlC8EDimQAEcphyd4qh6HIw5pGRkGtZycKVEAQ8kcPI8TvGaFj8OE-TtpnycxOkGB0HX0KnwoHuiJYeRvsdbTcvmXJynklhUBaeY0AaMl0BSfQJgDQWAaMDgBFxUH1lplNMcUTRenGaV257kS6XcRTAhtAAJlDQ5jnFABaAWhaIpnXIOnLmY5s80oz8f9H3sWr-RXK3+6l3PiT9WX1t9ANc64NyFO1IMutW7jw7tTIUPdfQvWKl3dKs8JR+DPCPUE5N6iKBKooAAShUGgDBFQz36qgAALPPZEvYkEMyZsrdeUtfiy0LDvfewtJ6RWnkGBhksvibxYdoNhT9L6PW9rfZ299PgRyfi-UAzMb6fzvlzdA8c-4UQCoAkMJ4QFtRRp8CAEDFBtxkNApBcD4Y0AckKIeIB7izQwZlGQasbEoN3lQxefhl70LXnw7EW9WF73HiLbh4tGH8OYXiYR5NrSvzER-fKyiH651jpcS4TlzhAA),...
https://github.com/scikit-bio/scikit-bio/pull/1894 added short-circuits to produce `0` where previously the formula would produce `NaN`. This is currently impacting QIIME 2's diversity measures and represents a breaking change from our perspective. For...
Hello everyone, We're planning on removing the SSW module from scikit-bio. This will occur sometime before the next release (which should be sometime in October). It has been a general...
Noticed by @sjanssen2 in #1825, the result of not providing a format to the `skbio.TreeNode.read()` resulted in substantially bad performance by the CSV sniffer. Since there is not a reader...
`Users have a consistent Tree API` - [ ] Handle linkage matrices (#346) - [ ] Have an equals method (#465) - [ ] Consistent handling of missing data (#791)...