Evan Bolyen

Is the FastAPI framework a new way of managing the Galaxy server (vs using ephemeris tools), or is it something else?

(had the wrong PR linked, updated)

I appreciate the discussion here, can I ask what the particular issue with `NaN` was? It's a good value for undefined, and is trivially converted to zero by code that...

I think the zero division error depends on the incoming number. A numpy-tagged float (i.e. the overloaded division operator) will warn and return `NaN`, but plain Python with `0.0/0.0` will...

> For example, species richness and Shannon can be uniformized into Hill number; Faith' PD can be generalized into abundance-weighted phylogenetic diversity. If we make them special, we will get...

Is the goal to keep this directory around? Creating a well managed temporary directory is just fine from QIIME 2's perspective (dumping things into the current working directory or specific...

I see! We don't have an equivalent concept, but @thermokarst and I have been chatting recently about "diagnostic" outputs. This could help inform that design. From poking around, it looks...

So I looked more closely at how tensorboard works, and while its not beyond the realm of possibility to static-ify the program (see https://github.com/tensorflow/tensorboard/issues/2045; there is a jupyter client, which...

That's a cool paper! :+1: for implementing. Granted it would be ideal if this was in `statsmodels`, but given that this correlation metric was designed in the context of bioinformatics,...

@mortonjt We can add the extra parameter later if needed, that would be a non-breaking change.