Eaton Lab

Hey @StuntsPT, Great solution! The legend creation in toyplot is not super intuitive. Saving the marker objects and passing them to the legend function is easiest, but not always doable...

No rush, but that sounds awesome.

I haven't had a chance to look at this yet, but one idea is that the problem may be related to indels, which are imputed into the catg array after...

This is implemented in the `snps_extracter` tool used in ipyrad.analysis. We could either (1) advise users to just use the ipa tools if they want to implement this filter; or...

Hi @MauriAndresMU1313 , This has to do with the unusual formatting of the newick string. It lists the support values as fractions (e.g., '99/100') instead the more common representation as...

Here is a hack that should work for now. The default newick parsing function will store the support values as 'name's, and then you can extract the info from names...

Hi @rotifyld, Thanks. I am very happy for new contributors. As you may know, the toytree draw arguments for `tip_label_colors` and `tip_label_angles` currently supports either a single or multiple values....

Hi @mrmrwinter , A few ideas: 1. The `draw_cloud_tree` option is available from `MultiTree` objects only, not from `ToyTree` objects, perhaps you are calling this method from the wrong object...

Note: Since the regression test compares against reference plots, I'm not sure this commit is truly failing, since it is suggesting a change that *should* change many of the plots...

@tshead2 I see, I think this commit will fix it. But, I think some recent change on main has broken the regression testing framework. It is failing during ` sudo...