pafr

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changing axis labels

2

For the dotplot function, how should I change the x/y axis labels. It seems like the regular ggplot functions (xlab, labs) don't work, the axis labels are still "query" and...

melodysyue

set size of sequence labels in dotplot()

3

Hi David, How can I set the size of label_seqs in the dotplot()? Best, Marco

fraca

Error in r[["strand"]] : subscript out of bounds

1

First off, thank you so much for developing this package. It's honestly a really nice addition and actually just what I needed to wrap up a project. Though there seems...

DanielleMStevens

Hi there Would it possible to allow multiple target and/or queries in the same synteny plot? It would be really handy for me at least Thanks

SAMtoBAM

I am using the data provided by the package: path_to_fungal_alignment

MmasterT

Hi again David - I figured I'd submit this as a separate issue. Again, I'd like to remove the target scaffold labels on the right of this coverage plot. I...

svedwards

Hi David Great tool, I'm really finding it useful. Can you suggest a way to clean up dotplots of large regions (e.g., whole genomes)? I can't seem to figure out...

svedwards

gematakbir

I have a paf alignment file with around 7 million alignments and a file size of just under 2Gb. Reading in the file leads to excessive memory usage. Currently well...

callumparr

display of dot plot

1

Hello, I got a very naive question here. I just wondered why the picture is made of little lines instead of little dots? And many of them are either horizontal...

zhaotao1987