dtaliun
dtaliun
Hi Peter, I have also a pythonic code that uses raw tabix’ed VCFs + numpy linear algebra (which can be speeded up compiling against BLAST/LAPACK). Daniel > On Feb 23,...
I think option 1 is better, because: - It is more easy to see which commands failed. E.g. imagine job5 failed. With grep -F "[5]" command you can quickly jump...
I would change `bash -c "${commands[${SLURM_ARRAY_TASK_ID}]}"` to `eval ${commands[${SLURM_ARRAY_TASK_ID}]}`
slurm scripts are limited to 4Mb. If thousand of jobs a listed in such manner and the command lines are long, then i recommend to save symbols. E.g. instead of...
Yes, this syntax is also ok for PBS on flux (only names of env. variables are different).
Following up on this issue. Looking at your scripts/documentation, I can't find any information if a check for the presence of het genotypes in non-PAR regions in males was done...
Check if you have added `-lcurl` in the makefile: `system: DYN_LIBS=-lz -lpthread -lbz2 -llzma` => `system: DYN_LIBS=-lz -lpthread -lbz2 -llzma -lcurl` You may want also to add: `-ldeflate -lcrypto`
Hi @milena-andreuzo, When you run chrX non-PAR in chunks, did all the chunks fail or only certain ones?