Dominik Schneider

radian icon

2

just a suggestion, it would great to have a square icon with a transparent background for tab identification. I set up a profile in windows Terminal specifically for radian but...

check type in lensfunpy.Modifier().initialize()

1

a small usability improvement suggestion. I was consistently getting a segfault error at `initialize` with the code below because I forgot to include the `[0]` indexing for `lens`. It would...

update dockerfile to conda-forge

5

The vice dockerfile is still refering to bioconda instead of conda-forge for pcv > 3.8 (i think thats what it was) I'm looking at these because I was wondering if...

correct readbayer behavior

1

it was discovered that readbayer() resulted in a different band order with more recent opencv than the one installed when the function was written. turns out opencv at the time...

no cli arg to turn off include_all_subdirs

4

I guess i missed when this behavior changed 👎 There is no way to revert to the old behavior of not including subdirs when using cli args https://github.com/danforthcenter/plantcv/blob/c2ad63c868227bbead043e41b6b618811907dc93/plantcv/parallel/parsers.py#L168 I could...

snapshot images don't have unique images

1

I discovered that snapshot images don't have unique filenames when creating #759. They are organized with subdirectories. This seems like a problem because the filename is used as the dict...

readbayer color channels are out of order

8

**Describe the bug** readbayer() is producing color images where the bands are out of order and image is rotated. I am actually getting a RGB image back (with bayertype 'BG')...

Executable scripts

1

**Describe your changes** Creates executable scripts for `plantcv-workflow.py`, `plantcv-utils.py`, and `plantcv-train.py` for all platforms using the `setuptools.setup(entry_point={'console_scripts':` in `setup.py`. Replaces the use of `setuptools.setup(scripts=` See #616 for discussion. **Type of...

I noticed yesterday that tests/data/VIS_TV_0_z300_h1_g0_e85_v500_93054.png doesn't load or open. Turns out it doesn't affect the tests because only the path is tested but I thought i'd mention it ``` def...

cross-platform compatible command line scripts

9

**Is your feature request related to a problem? Please describe.** I'm always frustrated when I move between windows and linux for running workflows because Windows doesn't recognize .py files as...