Suzy S

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installing and building fastq-join on a linux server.

You should be able to just type _make_ at the command line and the executables will be built for you, https://github.com/ExpressionAnalysis/ea-utils/blob/wiki/Compiling.md

installing and building fastq-join on a linux server.

cd into the clipper directory and you should see the Makefile there. Try the _make_ command in that directory

installing and building fastq-join on a linux server.

Yeah, that seems like a configuration problem. Sorry, seems like you can't avoid IT

fastq-multx not identifying barcodes

Can you give some more information about the type of assay and sequencing equipment used?

setup.py isn't pep8 compliant!

me too