Orhun
Orhun
LibRec Demo link is broken on README.md. Can you update it?
`from bio_embeddings.visualize import render_3D_scatter_plotly` **_TypeError: load() missing 1 required positional argument: 'Loader'_** I am getting an error like above when I try to import render_3D_scatter_plotly **Note:** It wasn't giving these...
After using ProtTransBertBFDEmbedder() or any other embedding methods, is there any way to detokenize/reverse embedded array? For example, ``` embedder_bertbfd = ProtTransBertBFDEmbedder() embedding = embedder_bertbfd .embed(sequence) reduce_per_protein = embedder_bertbfd .reduce_per_protein(embedding)...
Is it possible to get 3D coordinates of ligand using CID or SID? **Approach-1** ``` import pubchempy as pcp pcp.download('SDF', '4369521.sdf', 4369521, 'cid',overwrite=True) ``` **Approach-2** ``` c = pcp.Compound.from_cid(4369521) coords...
The Dataset link is broken. I couldn't download the below dataset. 'Foursquare/sequence' 'Gowalla/sequence' Can someone share with me?
I am getting the following error when I run **prog_poi2vec.py** IOError: [Errno 2] No such file or directory: './poidata/Foursquare/sequence/tra_target.npy' Where is the **'./poidata/Foursquare/sequence/tra_target.npy'**
Hi, First of all, thank you for sharing this project. When I check the code I couldn't find some txt file that you used. (Yelp_size.txt, yelp_train.txt, etc.) data_dir = '/data/disk10/rect/yelptract/'...
Hi, I'm converting a _pdb_ file to a _gninatype_ file. I have a process similar to the _gninatype_ function in the [link](https://github.com/devalab/DeepPocket/blob/main/types_and_gninatyper.py) ``` def gninatype(file): # creates gninatype file for...
I have a gninatypes file. The path of this file is `gninatype_dir` I have a sample.types file containing a single line. The contents of the file are as follows. `12.531857...
Can you add a link where we can download the dataset, which increases the citation of your paper? because we want to mention your paper but your code doesn't work.