Robbie P. Joosten
Robbie P. Joosten
Could you send us the pdb file (test.pdb) so we can check what is going on? For the record: the whole point of the more formal description of the mmCIF...
Thanks for the file. We don't deal with ColabFold yet and only with the AlphaFold DB that has proper mmCIF files. The file you sent isn't a proper pdb file...
Thanks for testing. This looks like a weird bug in pdb2cif. We will need to investigate at our side.
That sounds interesting. It would be really cool if FoldSeek can search the PDB-REDO databank. Is there something we can do from our side to make that easier? A practical...
I think PyMOL has brutalised your mmCIF file to the point that AlphaFill won't use it. If you want to just work on chain, A you can delete all _atom_site...
Could you check the latest release?
Could you check the latest release?
Not really an AlphaFill thing but let's have a look. Which type of Yasara do you have, View, Model, Structure or Dynamics?
I had a a look at the descriptions of the RANMAR algorithm. It seems to be uniform, I guess that is why it can also be used in Freeflag. Perhaps...
Now implemented in pdb-redo. Thanks.