dario righelli

Error splitting archr project

1

Hi, I have an ArchR project where I have six samples of two different conditions, but I'm trying to split the project dividing it by condition. My idea is to...

qTune/spatialCluster do not identify neighbours

3

Hi, I'm trying to apply your method to some Visium datasets, but it always says returns 0 neighbours out of #spots. There it is a reproducible example: ``` library(TENxVisiumData) library(BayesSpace)...

Apparently, our documentation suggests that our class is only for Spatially resolved Transcriptomics data as also referred in our README `SpatialExperiment is an R/Bioconductor S4 class for storing data from...

FeatureAssayPlot should be automatically updated by another panel selection

6

Hi all, I'm trying to implement an iSEE interface for a data visualization project, and I have two `ReducedDimensionPlot`(s) showing umap plots, one of which changes accordingly to a user-selected...