drhoads
drhoads
Figured out how to back track and get this installed in a Win10 running R4.0. Working on repeatMasker output on scorpion genome. Got to the rm_file
This was posted not for you but for dwinter, the developer. I am having a similar problem as you are. ***@***.*** From: Ravindra Raut ***@***.***> Sent: Monday, August 30, 2021...
In looking through the directories I could not find anything output from the polypolish runs. I switched to pilon and the polished assemblies all appear in flye\polish\short_reads\pilon\1\pilon.fasta and flye\polish\short_reads\pilon\2\pilon.fasta. Interestingly,...
I assume you mean dragonflye.log. We did have one glitch in this particular run which happened when the slurm script failed on a cd /local_scratch/SLURM_JOB_ID$ so the work directory defaulted...
In the root folder of the dragonflyeout? The size of that contigs.fa doesn't correspond to any of the sizes in the pilon/1 pilon/2 or polypolish/1 subfolders. The command I used...
results from 2107dragonflye-v3$ grep "^>" contigs.fa | head >contig00001 len=38981997 cov=110.0 origname=contig_580_pilon_pilon_polypolish polish=racon:2 round(s);pilon:short_reads,2 round(s);polypolish:short_reads,1 round(s); sw=dragonflye-flye/1.2.1 date=20250303 circular=N >contig00002 len=27615321 cov=106.0 origname=contig_2022_pilon_pilon_polypolish polish=racon:2 round(s);pilon:short_reads,2 round(s);polypolish:short_reads,1 round(s); sw=dragonflye-flye/1.2.1 date=20250303 circular=N...
Tried running just one genome against the reference with snippy --outdir '100AEA1' --ctgs '/mnt/f/DNAwork/Ececorum/strain.fna/100AEA1.fna' --ref ../prokka227/SA1.gbk --cpus 16 Seems there is an error reported in the snps.log (attached): ## freebayes-parallel...
Googled the error from the snps.log and found out I needed this: conda install -c bioconda tabixpp==1.1.0
You would need to work from the error in your snp.log. I only know what worked for me. Get Outlook for Android ________________________________ From: songdanyang1118 ***@***.***> Sent: Thursday, November 30,...
Turns out I was using the instructions from GenoScope which only had the 'make install' version, but I looked at your github page and tried 'sudo apt install jellyfish' and...