David

trying to get this working on the cluster

13

I am submitting this job on our cluster using slurm with: ``` models -> Execution halted ``` ``` $ singularity --version singularity version 3.3.0-1.el7 ```

resume scImpute?

3

hi, i am running scImpute (thank you!) on our cluster with: [1] "number of genes in raw count matrix 11213" [1] "number of cells in raw count matrix 14865" and...

dgCMatrix error smoothData

2

in this smoothData call `cellchat

generating masks from proseg segmentation

1

as i understand it from [this page](https://www.10xgenomics.com/support/software/xenium-ranger/2.0/tutorials/running-pipelines/XR-import-segmentation), running xeniumranger --import-segmentation with baysor-style inputs does not generate masks in cells.zarr.zip. yet i would like to use proseg segmentation as a mask...

cell filtering performed during proseg-to-baysor?

5

i have an issue that seems related to #73 but is probably just me not understanding the output. as far as i can tell from the proseg output (cell-metadata, cell-polygons,...