dosshra

Thank you for the response. I am working on ~10GB reference genome with ~1Mb contigs. I am using 120GB RAM. This configuration works well when I do not do the...

Thank you @tlemane for the response. See attached file. I should mention that a toy example of 3 fastq files from a different source worked well on the same machine....

Hello, I Downloaded a different version of the fastq files with a limit of 1M reads. kmtricks pipeline was running successfully on 20 files. I will try up-scaling.

Hello I tried to run with all samples and data. 120 samples, 420 read files (~14GB each). `kmtricks pipeline --file ./fof1 --run-dir ~/18tb/kmer_pa_bin --kmer-size 31 --mode kmer:pa:bin -t 10 --hard-min...

Hello I ran the following code: `kmtricks pipeline --file ./fof1 --run-dir ~/18TB/kmer_pa_bin --kmer-size 31 --mode kmer:pa:bin -t 10 --hard-min 2 --until count 2>kmtiks.err` This part runs successfully. And then I...

Hi I can read [Ecolitree - Copy.txt](https://github.com/KlausVigo/phangorn/files/3622216/Ecolitree.-.Copy.txt) using `read.nexus.networx` from phangorn R pakage, but trying to read splitree6 or nex files generated by Splitree 6 with this command results in:...

[4splitree.stree6.gz](https://github.com/KlausVigo/phangorn/files/10455290/4splitree.stree6.gz) Thank you for your email Please see file attached Hanan Sela PhD Institute of Evolution, University of Haifa Multi-Purpose Building, room 214 199 Abba-Hushi Avenue Haifa 3498838 Israel ***@***.***...

Please see tree attached [4splitree.stree6.gz](https://github.com/KlausVigo/phangorn/files/10455299/4splitree.stree6.gz) Thank you Hanan

Thank you for the bug fixes I works good now.