donghee choi

Some rows contain ''None" labels.

1

When I run `bash scripts/build_biorex_datasets.sh`, the error occurs. https://github.com/ncbi/BioREx/blob/0031c52d2dd0d7fb8e3b84e256d8fbf73c4bd463/src/run_ncbi_rel_exp.py#L112 Here, the code emits an error, because it cannot find a label when the label is ''. I think the https://github.com/ncbi/BioREx/blob/0031c52d2dd0d7fb8e3b84e256d8fbf73c4bd463/src/run_ncbi_rel_exp.py#L148...

run_biorex_exp.sh doesn't seem to use GPU

1

I tried to run the script but I don't think it is using a GPU. I stopped the code before this line (https://github.com/ncbi/BioREx/blob/0031c52d2dd0d7fb8e3b84e256d8fbf73c4bd463/src/tf_wrapper.py#L199C28-L200C1), and check it whether using GPU or...

Can you proivde a script or an explanation to reproduce scores in your paper?

5

In the paper (https://arxiv.org/abs/2306.11189), you wrote the scores below. Can you kindly provide a way to reproduce this?   For example, with the model you provided in the repo...

{"generated_text"} is not working; changed into ["generated_text"]