Dohoon Lee
Dohoon Lee
Hi, it indeed would be nice to make `metheor tag` multi-threaded, but unfortunately, we do not have enough time to set it out immediately. We'll get back to you if...
Thanks for your interest in Metheor. I'll look into the issue and get back to you. By the way, could you please provide a minimal BAM file to reproduce the...
Thank you for your suggestion! Actually I'm not familiar with the convention of using MM/ML tags at the moment, so I'll take a deep look on it and get back...
Hi, thanks for opening this issue. It's glad to know that metheor works well (and is fast) on your data! Yes, you're definitely right. Existing CpG-wise methylation level extractors such...
Yes, it considers only CpG sites.
That's right. MHL was designed for a genomic region in the original paper, but CpG-wise MHL was then proposed in Scherer et al., 2020, which is the benchmark paper for...
Yes, PM and ME values are assigned for four consecutive CpGs (i.e. CpG quartets). If you want to compute PM and ME in certain genomic block, you can simply average...
Hi! Could you please give me more details about the command used for compilation? Also it would be great to know your current environment for Rust development. Could you share...
If there isn't any specific reason to use version 0.0.3, could you please update metheor to the latest version (0.1.6) with `conda update -c dohlee metheor=0.1.6` and try again? Thanks,...
Thank you for sharing the log. It seems that there is a dependency conflict with metheor and some packages already installed in your environment. There is no simple way to...