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velocyto on 6 samples with integrated seurat obj.

1

Hi, first of all, thanks for developing Seurat and wrappers! It is awesome. I'm analyzing 6 samples with Seurat's SCTransform integration method. Now, I'm trying to project velocyto's output on...

Strange Cell labels cannot contain `0`! error

6

HI, I used cellChat since last month, using Seurat object. tutorial's code for converting Seurat object to Cellchat object worked well until last week... ``` data.input

how to merge 6 loom file?

2

Hi, first of all, thanks for developing Seurat and wrappers! It is awesome. I'm analyzing 6 samples with Seurat's SCTransform integration method. Now, I'm trying to project velocyto's output on...

Hi, I'm using scenic on the seurat analyzed dataset. So, I want to use my seurat clusters and embeddings. As I understand, SCopeLoomR needs 2 loom file. 1) pySCENIC output...

Hi, I want to use plannotate with my desired genome (like zebrafish, drosophila, etc.). I checked the BLAST_dbs.tar.gz file and I noticed the plannotate internally uses infernal(for RNA) and diamond(for...