Russian gentleman

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[BUG]Error: Invalid parameter count for option '--query'

actually i find an interesting question. The file "K97" was stored in a hard disk, and it can not be input, but it do can when i move it to...

Problem during prepare the database

@saras224 I am wondering if by chance you whould know how large it will be without uniref and kegg

problems to use the arg_ranker

Hi Thanks for your answer and you are so kind, but I maybe not explain my asking correctly. The first question is about the closed issue #14, is the method...

Is it reasonable to use diamond(blastx) instead of blast(blastx) in the ARG-OAP？

Hi! I am interested in this replacememt, but unfortunately I am not familiar with python, I would appreciate it if you could give me a specific modification Sincerely

Is it reasonable to use diamond(blastx) instead of blast(blastx) in the ARG-OAP？

Hi! Am I right to edit the code like below 1)only change the corresponding parameters in this area and do nothing to the else. ![0205_1](https://github.com/xinehc/args_oap/assets/101499808/7b7ab9a3-7001-4f5b-b578-1562044ea741) 2)exchange the stage_two.py of these...

Is it reasonable to use diamond(blastx) instead of blast(blastx) in the ARG-OAP？

Hi After some attempts, it didn't work. First,I changed subprocess.run([...]) to this: __def extract_seqs(self): ''' Extract target sequences using more stringent cutoffs & blast. ''' logger.info(f'Processing ...') nbps, nlines =...

#45 is really weird

[tax.csv](https://github.com/user-attachments/files/17313447/tax.csv)

#45 is really weird

[env.csv](https://github.com/user-attachments/files/17313501/env.csv)

#45 is really weird

[otu.csv](https://github.com/user-attachments/files/17313525/otu.csv)

Selection logic for gene_id in amg_summery.tsv

@rmFlynn I would be very grateful if you could answer my questions! QAQ