dgslos

+1 for new schemes

Not really. Each user should be able to update the db, not only an admin. Moreover, if you allow the user to specify the scheme db location, multiple scheme db...

Well, I tried as a regular user so stopped trying further. Regular users are not allowed to install conda environment on our server, they can only execute them. I think...

Same error appears. Small detail: it runs to the end in both scenarios, it creates pileup.vcf.gz files, but the full_alignment.vcf.gz files are without any variants called. Because of the warning...

Thanks! Can the error (or maybe better a warning?) message in that case be a bit more self-explanatory? Like the message you wrote now? =)

Check the file permissions on /usr/local/bin/ktImportTest: `ls -l /usr/local/bin/ktImportText` If it is not executable, do a chmod on /usr/local/bin/ktImportText

Check the file permissions on /opt/apps/kronatools/KronaTools-2.8.1/bin/ktImportTaxonomy: `ls -l /opt/apps/kronatools/KronaTools-2.8.1/bin/ktImportTaxonomy` If it is not executable, do a `chmod` on /opt/apps/kronatools/KronaTools-2.8.1/bin/ktImportTaxonomy

I added this to the payload and I'm still getting an internal server error. I, [2025-06-13T11:40:22.586275 #2929582] INFO -- : [dc326567-0803-4030-9ae1-6e62261257d6] method=POST path=/samples format=json controller=SamplesController action=create status=422 duration=16.45 view=0.35 db=5.82...

My JSON is ok I think. I forgot to copy the { in front of data. ``` { "data": { "type": "samples", "attributes": { "attribute_map": { "title": "Test", "species": "nematode_extract",...

Can it have something to do with the samples controller? For example this line: `@sample = Sample.new(sample_type_id: params[:sample][:sample_type_id], title: params[:sample][:title])`? I have no experience with Ruby btw, so I'm just...