Douglas Ford Hannum Jr.

icon indicating a website link www.linkedin.com/in/dfhannum

icon location Bioinformatics PhD Student in Dr. Jun Li's Lab at the University of Michigan

Results 5 comments of Douglas Ford Hannum Jr.

Support to handle `.parquet` output from Vizgen

This worked on all my test data and scenarios. The only other suggestion I would have is making `molecules` an optional input (since the file can be quite large, and...

Support to handle `.parquet` output from Vizgen

Any updates for this pull request?

Support to handle `.parquet` output from Vizgen

> > Any updates for this pull request? > > ..sorry I was a bit busy, will be adding a new arg `add.molecules = TRUE` in `LoadVizgen()` to have `molecules`...

Reading in MERSCOPE sample data with squidpy.read.vizgen() doesn't work for every dataset?

This issue should be resolved now.

bug loading vizgen data

There was an issue with indexing but installing `squidpy` from `main` should fix the metadata not populating. The spatial coordinates are being populated by the `center_x` and `center_y` from the...