Dengfeng Guan

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icon location No. 1, Beichen West Road, Chaoyang District, Beijing icon location Postdoc at Zoology Institute, China Academy of Sciences. Interested in algorithmic design and evolutionary genomics.

Results 3 issues of Dengfeng Guan

svim-asm on multiple samples

5 comment

Hello David, Currently I am running svim-asm on mulitple samples(species) separately, but I wonder if I can run sv calling on the samples together and generate a vcf with multiple...

Bug in reading genotypes from VCF/BCF?

1 comment

Hi, The code from 110 to 118 of pbwtHtslib.c in function pbwtReadVcfGT may bring a bug. ``` if (gt_arr[i] == bcf_int32_vector_end) x[i] = bcf_gt_allele(gt_arr[i-1]); // treat haploid genotypes as diploid...

segment fault

Hello, I ran into a segment fault on my samples, two of them did not pass chrX. I have checked the memory usage, with a peak of 8 Gb usage...