Martynas Dervinis

Results 30 comments of Martynas Dervinis

Ok, thanks for the link. Will try to make a matlab version at some point.

Hi. Just had some time write a code for saving version 1.3 ABF files both in Python and Matlab. These functions save data matrix rows as separate channels rather than...

Adding `load_namespaces=True` worked. However, I cannot load the same file in Matlab. Running the code line below ``` nwb2 = nwbRead('F:\infraslow-dynamics\03_data\003_allen_raw_derived\M766640955\session_766640955.nwb'); ``` gives the following error: ``` Error using types.util.correctType...

mpi4py seems to be incompatible with python 3.10. The following worked: ``` conda create --name bmtk-env python=3.8 conda activate bmtk-env conda install pytest conda install mpi4py git clone https://github.com/AllenInstitute/bmtk.git cd...

In Kilosort3 this gives a subsequent error: ``` Unrecognized field name "dmin". Error in template_learning (line 31) dmin = rez.ops.dmin; ```

Hi, No, I don't think I was able to solve this issue. I tried it for testing purposes and it didn't work, so I switched back to drift correction. Why...

I've never tried running ```master_file_kilosort3_Kenneth``` file. However, we have kilosort3 set up in our lab and running ok. There are a few odd features/bugs in the code though, but they...

Hi [k1o0](https://github.com/k1o0), I have installed Alyx as a local database and trying to use it to store my own data and possibly extending it even further for the entire lab....

Registering files worked after correcting base_url to ```base_url='http://localhost:8000'```

Thanks for a quick reply. I have also submitted a related issue on https://github.com/int-brain-lab/iblenv/issues/305 I suspect I am doing something wrong but I'm not exactly sure. But again this comes...