Conrad Leonard comments

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                                            Conrad Leonard

__gen_read routine does not reverse insertions on reverse strand

Thanks for finding this problem. Another obvious (not neatest, nor most performant) fix in a few lines is to generate both reads in forward direction and reverse & complement tmp_seq[1]...

__gen_read routine does not reverse insertions on reverse strand

Addition to the fix proposed above to make sure ext_coor is correct: ``` @@ -319,12 +319,15 @@ void wgsim_core(FILE *fpout1, FILE *fpout2, const char *fn, int is_hap, uint64_t tmp_seq[x][k++] =...

__gen_read routine does not reverse insertions on reverse strand

There is a subtle problem (or really 2 problems) with bredeson's original fix as it stands - reverse reads that terminate at or within insertions are incorrect. A reverse read...

6.x: functionality regression from losing requests in SPARQLStore

`httpx` has some nice features but not sure that it has fewer dependencies than `requests`... in any case I'm in favour of any solution that restores support for sessions and...

EntityManagerImpl.find doesn't generally work with NamedGraph annotated classes

Yeah, having the graph be part of the key seems nice from a practical pov. I think it's also kosher from a RDF theory pov, not that I am an...

feature: support running the app under a base URL

Thanks @meericsc ; I don't have experience in clj or single page apps but I will take a run at a PR. Can you very briefly describe the changes you...

feature: support running the app under a base URL

Thank you @Macroz for the background and detailed description. I'll have a go at this.

api/audit-log endpoint => 500 server error

Thanks @Macroz ! This now works for me as expected.

Feature request: package this project for multi-user system

@mrendleman that's pretty much what our users have too - genomes and input datasets that may not be shareable, plus input datasets that may evolve over time. Having them each...