David Grainger

Hi @SeppeDeWinter , Are you able to provide any update on this please? I am facing the same issue of `create_nx_tables` giving empty dataframes. I am also running into errors...

Not to worry, we can see you're a busy guy! 😄 I troubleshooted my way through the above solution and got it working in the end. Thanks for all your...

Hi @SteveTur, Sure, I can share what I did but it mostly came from @DmitriiSeverinov's answer [above](https://github.com/aertslab/scenicplus/issues/393#issuecomment-2132982932). I ran SCENIC+ through the snakemake pipeline using version 1.0a1. I converted my...

> Hi @SeppeDeWinter, @degrainger, @DmitriiSeverinov, > > I managed to make it work too! However, I am still confused with some parameters in this function. How do you choose the...

Hi @ConstensouxAlexis @lisch7, I was running into the same issue as you with the white background. I managed to solve it. I think the `set_zero_in_cmap_to_transparent() `function is running correctly and...