Devika Agarwal

Best way to quantify all CBs with alevin to use with SoupX

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hi! while this has been discussed in detail in #379 , there have been many releases of Alevin since then. So i am just a bit confused, if i want...

cnet plot wont show foldchange

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Hello, I am using the latest version of enrichplot and clusterProfiler from github. For some reason the cnetplot and heatmap function dont show the Foldchange even if i provide it...

Hi Im trying to run the scrattch.hicat module on some 10x data. however the iter_clust function keeps failing with the error Error in unique.default(cl) : unique() applies only to vectors...

the motif annotation databases for the new 0.12.0 release

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Hello, I had question in regard to the updated databases for the latest release. I see that the feather v2 files are now available on cisTarget databases. However, what about...

RunHarmony on the weights branch errors with incompatible matrix dimensions

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Hi, I am trying to use the weighted harmony as implemented in this paper DOI: [10.1016/j.medj.2022.05.002](https://doi.org/10.1016/j.medj.2022.05.002) , so i was using the weights branch. I installed the weights branch successfully...

Will the latest R harmony updates be propagated to the harmonypy

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hi , I was wondering, if the recent updates made to the harmony R package which takes harmony to [v1.2](https://github.com/immunogenomics/harmony/pull/218) will be propagated to the harmonypy package as well? We...

potential workflow for MultiMAP.Integration for cross species analysis

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Hi, I had a quick question in regards to using MultiMAP for cross species analysis, should I only have the 1:1 orthologues between the two species in each of the...

Hi ! Thank you for making such a nice tool and making all the relevant traits that you tested in the paper available for others to use. I was wondering,...