Daniel Domingo-Fernández

collapse_nodes does not apply to members of ListAbundance

3

I noticed that if you apply _collapse_nodes_ is not being applied to the members of ListAbundance (reactions, complexes...)

Update gensim size parameter

2

See: https://stackoverflow.com/questions/53195906/getting-init-got-an-unexpected-keyword-argument-document-this-error-in

http://bio-bigdata.hrbmu.edu.cn/CPAD/download/CPAD-data.txt Parse this file and create a repo

Update reactome version

1

- [ ] TODO: Fix the SPARQL query to get the names of all pathways and their identifiers GET_ALL_PATHWAYS = """ SELECT DISTINCT ?uri_id ?name WHERE { ?uri_id rdf:type biopax3:Pathway...

Add NCI PID - Pathways

1

http://www.ndexbio.org/#/networkset/8a2d7ee9-1513-11e9-bb6a-0ac135e8bacf