Dan Ofer

CL support?

2

Any plans to allow openCL support? (Given that other neural art style algorithms in Torch support it). Thanks!

Any chance you will upload the trained, final model? Thanks!

ProteinBert Support?

3

Hi, What would be needed in order to add support for ProteinBert embeddings? (The framework/package is written with Keras/TF, and also supports GO annotations): https://github.com/nadavbra/protein_bert

Is there any way to directly load the ESM models with the HF Transformers (or similarly compatible) libraries? e.g. with `AutoModelForTokenClassification`? Thanks! (I want to do finetuning, and to use...

Silly question: How should new data be formatted, in order to learn/predict over it? Assuming I have sentences and a label for each sentence. (I didn't see labels in the...

Theano Error: 'TensorVariable' object has no attribute 'cast'

3

Hi, I'm trying to run the "example" on my own data. After fitting the tokenizer, I get a big, long list of error messages from Theano. Background: Windows 8.1. Anaconda...

Benchmark Tasks - results and data missing

1

The current Benchmark Tasks lack any results, dataset details and most importantly results. If they're all empty, page should be renamed "example tasks" at least. https://ohdsi.github.io/PatientLevelPrediction/articles/BenchmarkTasks.html

Credit/Origin?

10

1. Nice resource! I may add some to it in future (although the ones I use for benchmarking are considerably "rarer" than the ones here - time-series + raw text...

XLNet code missing

1

Some code is missing from the winner’s submission; https://github.com/rapidsai/deeplearning/tree/main/WSDM2021/02_Models/XLNet_SMF Good stuff overall! Congrats!

Datasets for replication?

2

Hi, I'm interested in trying your framework + replicating your results (especially on the second, "long range" dataset you added). Where is the data available? (Both yours and the Troyanskaya...