Dayne Filer, MD, PhD

icon indicating a website link daynefiler.com icon indicating an email [email protected]

icon company Duke University Hospital, Renaissance Computing Institute icon location Durham, NC icon location Resident Physician Scientist, Duke Obstetrics & Gynecology; Adjunct Scientist, Renaissance Computing Institute; Private Consultant

Results 5 issues of Dayne Filer, MD, PhD

Display shell command when `-p` is given.

1 comment

snakemake --version 5.10.0 Not sure if this belongs here, or on the general snakemake page, but it would be really nice to see the shell command for the snakemake wrapper...

bug

devtools::document() errors before NAMESPACE can be updated

6 comment

When running `devtools::document()` using roxygen2 to manage the namespace, the function errors before the NAMESPACE file can be updated/written. I have run into this in two situations: (1) adding a...

bug
namespace :woman_astronaut:

Using expect_named with glue causes error

This is certainly an edge case, but I notice `expect_named` does not treat `glue` objects as ``. ```r test_that("expect_named accepts glue for 'expected'", { v

feature
expectation :scream_cat:

Soft-clipping with linked-region filter

Hi, first -- **thank you** for your software! I am working with paired end sequencing on a pool of fragments that contain a large proportion of fragments shorter than the...

Java version check

4 comment

I was running into issues building the hg38/ucsc database under the following Java version: openjdk version "1.8.0_192" OpenJDK Runtime Environment (Zulu 8.33.0.1-linux64) (build 1.8.0_192-b01) OpenJDK 64-Bit Server VM (Zulu 8.33.0.1-linux64)...