davidvilanova
davidvilanova
Was not expecting this in a skin sample, but you´re right it´s probably close to the bacterium.
Not really familiar with SSL, what these options should be ?
Ok to make it work you need to add the `ssl_verifyhost=F` parameter. The following will work: ``` es_conn
Great, I have tried so far, see shot below. The taxonomy is two columns , fist column is accession and seconds columns are taxonomy as follows: 129138 Bacteria;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;Pseudomonas amygdali What...
Great !!! I have generated the database, can i use now with taxonkit -lca ??
I have the following problem. I have added a new database using the workflow above and generated the Silva to TaxIDs. For a particular id (1824050977) i don´t have a...
Great, One more comment. When using all ranks i will have a problem to get a proper taxonkit lca assignment because by default the upper levels will be picked up....
Yes sure, What i´m trying to achieve is to annotate with Silva a set of nanopore reads. For that purpose i´m mapping one metagenomic sample reads to the Silva 16S...
Thanks for the update, there is one strange behaviour for lca. I was expecting LCA to go up to the staphylococcus genus level but it went up to bacilli. I...
Hi @Huanle , i end up using guppy which now incorporates demultiplexing and barcode trimming. Best,