davidackerman

Hello, I have noticed that the endianness of the labels array affects the ids that the mesher reports. For example ```python import zmesh import numpy as np for endian in...

Create sample dataset

18

We need a sample dataset in a predefined format for testing and demoing

In examples, want to specify path to config store within the notebook

1

Rather than relying on separate dacapo.yaml that contains just ```yaml type: files runs_base_dir: /path/to/my/data/storage ``` have that set in the notebook.

Creating a Run from a config doesn't work unless retrieved from store

1

When I create a run_config like in the [example notebook](https://github.com/janelia-cellmap/dacapo/blob/dev/examples/examples/distance_task/liver_peroxisome.ipynb), if I create a Run from it as follows: `Run(run_config)` I get the following error: `AttributeError: 'CNNectomeUNet' object has no...

Newest funlib.persistence>=0.5 has breaking changes

1

`open_ds` and `prepare_ds` are fundamentally different in 0.5 vs previous versions. We would either have to restrict which versions we are compatible with or update it to work with the...

Is there a build model_creation example?

15

Previously, there was a model_creation example notebook. It is also referenced in the [Bioimagezoo developers guide](https://bioimage.io/docs/#/guides/developers-guide) as being [here](https://github.com/bioimage-io/core-bioimage-io-python/blob/main/example/model_creation.ipynb). If not, is there another such example of how to create...