David Priest

Experience of RStudio User Trying to migrate

8

I am a data scientist. I was recommended to try Visual Studio Code as a replacement for RStudio. I gave it a good shot but decided not to use it...

Cluster by features in DotPlot

1

I could not find an option to cluster DotPlot by features in addition to Idents. Below is a function that achieves this. Do you think this is the best approach?...

Please add the option to use clustering in colData

2

Please add the option to use a custom clustering stored in the column data when the input data is an SCE with cluster codes.

It's a minor thing I know, but in stat_pvalue_manual() would it be possible to reduce the size of the "ns" label relative to the "*" etc? Thanks for your great...

Thanks for the great tutorial. Everything runs well up until `cl_markers %>% group_by(cluster) %>% top_n(n = 2, wt = avg_logFC)` I think something may have changed such that it should...

I have tried quite hard to get dynverse working with PAGA tree with no luck. I can get dynverse working fine using slingshot. I would greatly appreciate if you could...