Dan Vasilescu
Dan Vasilescu
I am using ASTNode math = ASTNode.parseFormula(expr); This is the exception I'm getting: org.sbml.jsbml.text.parser.ParseException: org.sbml.jsbml.text.parser.ParseException: Encountered " "-" "- "" at line 1, column 15. Was expecting one of: ......
Restored Frank's code for single reaction copy and paste Fixed a Null pointer exception in rules copy Fixed Null pointer exception in stochastic spatial post processing table When copy and...
PR #808 Commit 1275ba6
I was able to create a Springsalad math model from a biomodel, ran the Langevin solver on the input data created from it and display some results.
@jcschaff I do not know how to reproduce this
@jcschaff It's a bug, if you try to copy and paste 2 reactions s0->s1 and s0->s2, from one vcell instance to another, the code will duplicate s0 at the destination.
@jcschaff @ACowan0105 The implementation of copy and paste for reactions is different from the implementation for rules. Maybe we could find time to unify them, both the UI and functionality
I think that the required data (min, max, SD, average) is only available for Gibson (as hdf5 file). I'm stuck with the resizing/scaling to window size and painting code.
@jcschaff The current code defines as catalyst all species that show it the kinetic parameter table and is not a reactant / product. So, fixing this will simply mean adding...
@jcschaff This observable was initially created when we were dealing with single compartment models. It allowed us to verify mass conservation, which allowed us to fix some very nasty early...