dansteiert

add the -r flag to get a ridgid molecule. It worked for me ;)

After re-setting up my Linux machine(Ubuntu 20.04.3 LTS), I came across missing dependencies not incorporated into the setup I propose the following: ``` # get necessary dependencies sudo apt-get install...

It seemed to me that the option is silent in the file src/MutSig_2CV_v3_11_core.m If you want to change this, I added an if clause as shown below and set the...

Hi @skchronicles, thank you for your input. I understand the notion to keep it all within a single workflow, such that their is no confunding factors within the results. Nevertheless...

To the model history, it is NaN everywhere from the first epoch. Thank you I will have a look into the autotune function and see If I can find something...

I faced a similar issue. When looking into the log, I found that something else caused this error message. (Use of a custom genome and missing of additional inputs). But...

Thank you for looking into this. I installed as mentioned above, what worked for me, is building scIRpy ontop of a conda environment with pip. the force reinstall did not...

Thank you for your super fast response -> yeah the update to the github version changed the behaviour, although, not it clips away on the axes boarder  ``` adjust_text(texts=anno,...

`[arrow.set_clip_on(False) for arrow in patches] ` using the returend patches and setting this, shows me the clipped arrows again ;) and the text is now well clipped

on the last image I posted, there is also an "issue" of labels having different indentations. I set the x-coord always the same. and set these options, but somehow, they...