Daniel Geiszler
Daniel Geiszler
Hi @lmcinnes , Was there any progress into getting prediction working for precomputed distances?
Hi @piroman999 1. This is something we will discuss internally 2. This would probably require a fundamental reworking of the search engine and is not possible
Hi, I’m downloading them today. Not sure when we’ll have the chance to look at them.
@huiyinc Will TMT-I expect the purity column when FreeQuant is disabled?
@huiyinc I think it's connected to FreeQuant, not LabelQuant. I was running some tests with it a few days ago and wasn't using LabelQuant. @prvst would know.
This normally means you have a temporary interact pepXML file from a previous PeptideProphet run that needs to be deleted. Please check to see if you have something that looks...
Is this resolved?
Hi, No, nothing wrong on your end. It looks like it just hung when it crashed there. Can you upload the peaksummary.annotated.tsv for me?
Ah, I think I see what the issue is. WT_plus_1 seems to be a problematic sample. It has no PSMs. I think if you remove that it should run. Same...
Open search should return your glycans. Did you make sure that the mass window was large enough to detect glycopeptides? If you're modifying the glycan chains to essentially create new...