David Nicholson

>what standards the NLP / text mining community has for including named entity tags in documents. CC @danich1: aware of any standards for how to encode tagged entities in HTML?...

> should also have snorkel_labels_train.xlsx to go along with its test and dev files. Does this exist and if so is there any chance of getting access? So this folder...

>I was after the hand labelled train/dev/test sentences to bolster my dataset for a similar RE project, not the entire pubtator db. Would it be okay for me to use...

I forgot to upload onto this repository, but here is your request file: [Disease Associates Gene Train](https://github.com/greenelab/snorkeling/files/7477482/sentence_labels_train.xlsx)

Greetings Alex, I believe your problem is an OS version issue. For linux things work fine, but not surprised MacOS is having issues. I think the quick fix for this...

Right. I figured that would happen. Reason for the error is that some of my notebooks was using snorkel's old version, before the authors upgraded their code. The old code...

>PicklingError: Can't pickle : attribute lookup DiseaseGene on snorkel.models.candidate failed This error arises because the pickle library cannot pickle sqlalchemy's candidate_subclass class. This is actually not an easy problem to...

Below are examples of the desired and undesired Disease-Gene candidate relationships we will be working with. ## Good Example: >PATIENT: We describe a male infant with early **infantile epileptic encephalopathy**...

Ah interesting. Another question: is the table format in terms of [lf=(0,1,2),Y=(Y=1, Y=2)]? In other words If I pass in source=0, I should get back a matrix that corresponds to...

```R library(hexbin) df