David Angeles-Albores

icon indicating a website link https://dangeles.github.io icon indicating an email [email protected]

icon company Altos Labs icon location San Francisco, CA icon location Computational Biologist

Results 13 comments of David Angeles-Albores

MNLogit.initialize() cannot operate on a 1-d vector

`dummyDS` is a vector of integers (0, 1 and 2) extracted from a pandas DataFrame using the .values call.

MNLogit.initialize() cannot operate on a 1-d vector

dummyDS.dtype is int64.. I sliced out the first values of the `dummyDS` variable: `otu.dummyDS.values[:10] = array([1, 2, 2, 1, 2, 1, 2, 1, 1, 1])` I made up some endog...

MNLogit.initialize() cannot operate on a 1-d vector

I figured `initialize` was not required, but the docs could be better written to reflect this. As it stands, `initialize()` reads like the `StandardScaler()` from `sklearn`. Thanks for the help!

MNLogit.initialize() cannot operate on a 1-d vector

Yeah, I wasn't thinking when I called `initialize`. However, it is now concerning to me that `initialize` is described purely as a normalization, yet calling it twice results in an...

MNLogit.initialize() cannot operate on a 1-d vector

Ack, my reading skills suck, and this is a sign I should probably lay off of this now. > initialize() | Preprocesses the data for MNLogit. I interpreted this as...

Error on test data

I'm getting the exact same issue, but ulimit is 65536. Any idea what might be causing this?

Error on test data

Hey! Thanks for answering so quickly. I'm on a Debian Red Hat system. I have 287 read groups.

Error on test data

Ah, a further check reveals that the software I'm using was last compiled on 2016-05-25. I will reclone the repo and see if this fixes anything

Error on test data

OK, I've recompiled, and the error is still the same.

Error on test data

Hey, sorry, I was traveling with limited access to internet. Here's my output from ulimit -a: ``` core file size (blocks, -c) 0 data seg size (kbytes, -d) unlimited scheduling...