daisyyr

How to re-run from the breakpoint

3

Hi, I encountered an issue while running the "run_numbat" function on a dataset of around 40,000 cells. The process was time-consuming, and unfortunately, the job was terminated at the step...

how to prepare "segs_consensus_fix" if I have WES data of multiple samples from the same patient

2

Hi, Thank you for developing such a wonderful tool! I am currently looking to utilize the existing CNV profile via the `segs_consensus_fix `parameter to establish definitive CNV boundaries and states....

Alignment is not BAM or CRAM file

4

Hi, I am trying to run cgpwgs within docker on my own data. Here is my code: ``` export CGPWGS_VERSION=2.1.1 docker run --rm \ -w myworkpath/Project \ -v myworkpath/:myworkpath/ \...