Joe Daccache
Joe Daccache
Hi @sqjin thanks for your quick reply. I originally had `do.fast = TRUE` and also tried running not in parallel and those changes did not solve the issue, but setting...
Also this is an unrelated question, but is there a method to group cells by a meta data variable not used for the analysis itself? For example create a summary...
Thanks, that works! Another note- when performing a `Bonferroni` correction on the ligand-receptor results (as stored in cellchat@net) would I be dividing by the total number of ligand-receptor pairs in...
Hi all, I'm getting the same error currently when trying to convert Seurat objects to loom objects using the as.loom function. Before as.loom I'm converting the character and factor NA's...
Would you mind sharing the code you used to generate that plot? I can try it on my data. It could be the package you used to run PCA but...
Let me see if my code can help at all. My lab meeting with the plot above was lauded as likely incorrect but maybe you can share your thoughts on...
Right... Is the performance drastically improved with it? sorry for the questions, just trying to get my bearings
Yes that was my question, thanks Haynes! We will like to know which individual is which so having the genomic information will be helpful. Any specifications or will a typical...
Thanks for your help!
HI Seppe, Thanks for this solution but unfortunately it did not work for me. Dropping to 0.55 had preflight errors in run_scenic_plus and upgrading to 0.58.1 resulted in the same...