Daanish Mahajan comments

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                                            Daanish Mahajan

RawHash on R10.4 human genome

Hi @canfirtina, I tried running the tool using --r10 command but I am getting the following message corresponding to every read in the err log file, because of which the...

RawHash on R10.4 human genome

Hi @canfirtina, It worked! Thanks a lot :). The mistake I was doing is I was not passing --r10 while creating the index and only while mapping.

Significant difference in accuracy when changing the reference from CHM13 to HG38

Hi @canfirtina, a gentle reminder for the same. Thanks

Significant difference in accuracy when changing the reference from CHM13 to HG38

Hi @canfirtina, 1. I am using the 2013 version downloaded from here: http://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz 2. Sure I will do that and get back to you asap.

Significant difference in accuracy when changing the reference from CHM13 to HG38

Hi @canfirtina, I went through the experiment again and found an error in the same. I was simulating squiggles using R10 pore but mapping and indexing using R9 pore chemistry....

VG crashed making xg from vg on HPRC v2 graph

Thanks, it worked.