d-j-e


At the moment the pipe only takes Illumina paired-end with the endings _1.fastq.gz, _2.fastq.gz. This currently means the user has to rename the reads to match the pattern before running...

There is a potential recursion issue with large trees (>7500), independent of the issue mentioned here.. https://github.com/d-j-e/SNPPar/issues/13 Unfortunately this recursion error occurred during the execution of TreeTime, not SNPPar itself,...