cynthier

Hello, I meet with this problem also. In image analysis part, I performed cell segmentation on my Visium data, and the the value of "cell count" is so low that...

Thank you so much for your rapid reply! I use `nan = (True in np.isnan(atac.X.data))` to confirm there is no NaN value.

Okay. Thank you in advance. ``` /Conda/R4b/pkgs/glu/lib/python3.10/site-packages/scglue/num.py:289: RuntimeWarning: divide by zero encountered in divide idf = X.shape[0] / X.sum(axis=0) /Conda/R4b/pkgs/glu/lib/python3.10/site-packages/scipy/sparse/_compressed.py:466: RuntimeWarning: invalid value encountered in multiply data = np.multiply(ret.data, other[:,...

Thank you so much. It works now. But I feel curious about another error when running `guidance = scglue.genomics.rna_anchored_guidance_graph(rna, atac)` : `AttributeError: module 'scglue.genomics' has no attribute 'rna_anchored_guidance_graph'`

It is version 0.2.3. I installed it using command `conda install -c conda-forge -c bioconda scglue `

I update the package and it works. Thank you so much! But I meet with another error (crying). My input data are both count matrix. But the erro occurred when...

I meet the same problem, have you solve it?