Charlie Seto

solidity-custom

2

From a previous github issue in re Simka: "If you still need to recover kmer sequences, for instance recovering subsets of kmers according to their presence/absence in some datasets, you...

Pre-processing issue

2

Using the AMPHORA files in the paper, and applying it to my own data, I've encountered an error with python 5.filter_np.py python 5.filter_np.py --aln all_alignments.cPickle --map /home1/cseto/StrainFinderFiles/bact.meta.txt --samples samples.txt >...

Summary: Not having unique names in the headers may cause mismatches between PctSim and e-value/bitscore, blastn output issue more than a MMinte issue. Background: Building my own blast databases, I...

Strange violations of mass-balance rxn05842 rxn05845 rxn05844 rxn07227 rxn05843 Each reaction is involved in the interconversion of "Phosphate" into either ADP, CDP, GDP, NDP, UDP. The full reaction on KEGG...