Collin Tokheim

icon company Dana-Farber Cancer Institute icon location Boston, MA icon location I am a data scientist that develops machine learning algorithms to gain insight into cancer

Results 4 issues of Collin Tokheim

Uniprot annotation in OC can be misleading

1 comment

I noticed a case where the primary transcript for variant annotation would seemingly indicate that it matches the uniprot protein sequence, but in actuality it does not. For example, see...

Required vs optional CLI arguments

Is the config file a required argument? Might be nice to add required=True so that argparse catches this, or if there is default then put a default=XXX in the add_argument...

SCHISM GUI

2 comment

I saw in interesting github package that turns python command line tools into GUI's (https://github.com/chriskiehl/Gooey). Works by figuring out the inputs from argparse. Seems to work on SCHISM (didn't bother...

enhancement

Fixed hex codes in color palette

Looks like the "#" was dropped on several hex codes. Matplotlib doesn't like this.