Claudio Slamovits

icon indicating a website link http://slamo.biochem.dal.ca icon indicating an email [email protected]

icon company Dalhousie University icon location Halifax, NS, Canada icon location A biologist teaching molecular biology and genomes; a researcher working on the same. Genome evolution, transposable elements, lateral gene transfer, etc...

Results 2 issues of Claudio Slamovits

Stalled at prefitering?

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I started 3 metaeuk jobs, all with different fasta input but same pfam_full database. They all seemed to stall at a prefiltering step (different step) but the jobs appearing as...

ERROR: Process requirement exceeds available CPUs -- req: 2; avail: 1

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I'm trying to run HiTE with Singularity on an HPC cluster. I reserve 48 CPUs on SLURM: #SBATCH --nodes=1 #SBATCH --mem=300G #SBATCH --ntasks-per-node=6 #SBATCH --cpus-per-task=8 ...and add the '--threads 49'...