cristanchoa

order of columns in top annotation not matching the heatmap

1

Hi, Thanks for the wonderful and flexible package. I created a heatmap object based on Complex Heatmap using ArchR. I need to re-order the columns and change the top annotation....

Error with addReproduciblePeakSet() in finding MACS2

3

Hi, thanks for the great package. I am tweaking some data I have and need to remake an ArchR projects with new peak set. I ran the addReproduciblePeakSet() command below...

What slot does DEnrichRPlot use within the assay?

5

I was running DEnrichRPlot using my SCT assay after the PrepSCTFindMarkers. The data didn't quite make sense, so I reran it under the "RNA" assay. The data was drastically different...