confor

Document directory layout

1

I've written a bit on scoop's directory layout and what each folder contains. This should be useful for curious users (me :p) or for troubleshooting.

cast PyObject to PyArrayObject for python 3.13 support

2

previously lightdock wouldn't build on python 3.13.5 (debian 13.1), so i've added a simple cast to the numpy C variables to fix the compiler error. i've based this on 1.0.0-pre2,...

**Description** as of commit b46f284773002959248d73e665fba1dcb1b36140 which introduces prody 2.6.1, lightdock cannot run on python older than python 3.10 because of prody's [requirements](https://github.com/prody/ProDy/blob/v2.6.1/pyproject.toml#L4) and [version checks](https://github.com/prody/ProDy/blob/v2.6.1/prody/__init__.py). python 3.9 [reached end-of-life just...