Justin Conover

Hi, thanks for developing MCScanX! I've found it of great use. I have already ran one analysis using the -a option to stop after writing the .collinearity file, but now...

vg giraffe hangs on some samples, works fine on others

12

**1. What were you trying to do?** Use vg giraffe to map wgs reads to a graph. **2. What did you want to happen?** The program to run to completion...

[Feature Request] Creating gene/exon entries automatically via GFF3/GTF annotation files in nucleotide-based models

5

When using the nucleotide-based models on real genomes (i.e. those imported from fasta files), it is difficult to add genes and exons manually, but this information is easily accessible with...